
M. Sterling, X. Dong, and M. Bocko, "Representation of solo clarinet music by physical modeling synthesis", in International Conference on Acoustics Speech and Signal Processing, ICASSP 2008, 129132.
 Xiaoxiao Dong, Mark Sterling, and Mark Bocko, "Empirical physical modeling based music synthesis and representation" (A), J. Acoust. Soc. Am. 122, 3055 (2007).
 E. J. Tan, Z. Ignjatovic, M. F. Bocko, "A CMOS Image Sensor with Focal Plane Discrete Cosine Transform Computation", IEEE International Symposium on Circuits and Systems ISCAS 2007, 23952398.
 H. O. Altun, O. Bulan, G. Sharma, and M. Bocko, "Improved embedding efficiency and AWGN robustness for SS watermarks via precoding," In Delp et al. Proc. SPIE: Security, Forensics, Steganography, and Watermarking of Multimedia Contents X Electronic Imaging Symp. 2731 Jan. 2008, San Jose, CA.
 A. Orsdemir, H. O. Altun, G. Sharma, and M. Bocko, "Steganalysisaware Steganography: Statistical indistinguishability despite high distortion," In Delp et al. Proc. SPIE: Security, Forensics, Steganography, and Watermarking of Multimedia Contents X Electronic Imaging Symp. 2731 Jan. 2008, San Jose, CA.
 H. O. Altun, G. Sharma, A. Orsdemir, and M. Bocko, " Collusion resilient fingerprint design by alternating projections," in Proc. IEEE Intl. Conf. Image Proc., 1619 Sept. 2007, San Antonio, TX, vol. IV, pp. 437440.
 M. Sterling and M. Bocko, "Direct digital predistortion on a computer controlled FPGA," in Proc. IEEE Int. Conf. Acoustics, Speech, Signal Processing, 2007, pp. II369 II372.
 O. Altun, G. Sharma, A. Orsdemir, and M. Bocko, "Collusion Resilient Fingerprint Design By Alternating Projections", Accepted for ICIP 2007, San Antonio, Texas.
 Bartlette, C., Headlam, D, Velikic, G, and Bocko, M.F., "Effect of Network Latency on Interactive Musical Performance", Music Perception, Volume 24, Issue 1, 2006, pp 4962.
 O. Altun, G. Sharma, M. Celik, and M. Bocko, "A set theoretic watermarking and its application to semifragile tamper detection," IEEE Trans. Information Forensics And Security , IEEE Trans. Info. Forensics and Security, vol. 1, no. 4, Dec. 2006, pp. 479492
 O. Altun, G. Sharma, and M. Bocko, Set theoretic quantization index modulation watermarking," in Proc. IEEE Intl. Conf. Acoustics Speech and Sig. Proc., May 1517, 2006, Toulouse, France, ol. II, pp. 229232.
 O. Altun, G. Sharma, and M. Bocko, "Multiple watermarking: A vector space projection approach," in Proc. SPIE: Computational Imaging IV, vol. 6065, C. A. Bouman and E. L. Miller, Eds., Jan. 2006, San Jose, CA.
 O. Altun, G. Sharma, and M. Bocko, "Optimum watermark embedding by vector space projec tions," in Proc. IEEE Intl. Conf. Image Proc., 0811, Oct 2006, Atlanta, GA, pp. 14131416.
 Ignjatovic, Z., Bocko, M.F. "An interface circuit for measuring capacitance changes based upon capacitancetoduty cycle (CDC) converter", IEEE Sensors Journal, Volume 5, Issue 3, June 2005, pp: 403  410.
 George, S.E., Bocko, M.F., Nickerson, G.W., "Evaluation of a VibrationPowered, Wireless Temperature Sensor for Health Monitoring" Aerospace 2005 IEEE Conference 0512, March 2005, pp: 1  7.
 Ignjatovic, Z., Bocko, M.F., "A method for efficient interpolation of discretetime signals by using a bluenoise mapping method", Proceedings of the IEEE International Conference on Acoustics, Speech, and Signal Processing 2005, (ICASSP '05), Volume 4, pp: IV213  216.
 Ohki, T.A.; Wulf, M.; Bocko, M.F., "Picosecond onchip qubit control circuitry", IEEE Trans. on Applied Superconductivity, Volume 15, Issue 2, Part 1, June 2005, pp:837  840.
 Altun, O., Sharma, G., Celik, M., Bocko, M.F., "Semifragile hierarchical watermarking in a set theoretic framework", Proc. of the International Conference on Image Processing 2005, pp. 10011004.
 Altun, O., Sharma, G, Bocko, M.F., "Informed watermark embedding in fractional Fourier domains", EUSIPCO , Sep. 2005 (in press).
 Sterling M., Titlebaum, E., Bocko, M.F., "An adaptive spreadspectrum data hiding technique for digital audio", Proceedings of the IEEE International Conference on Acoustics, Speech, and Signal Processing 2005, (ICASSP '05), pp. 685688.
 Altun, O., Sharma G., Celik M., Bocko, M.F., "Hierarchical set theoretic watermarking for tamper detection,", Proc. Western NY Image Processing Workshop 2005, pp. 2326.
 Altun, O., Sharma, G., Celik, M., Sterling, M., Titlebaum, E., Bocko,M.F., "Morphological steganalysis of audio and the principle of diminishing marginal distortions", Proc. of the IEEE International Conference on Acoustics, Speech and Signal Processing 2005, pp:21  24.
 Ohki, T.A.; Wulf, M.; Steinman, J.P.; Feldman, M.J.; Bocko, M.F., "Thermometry using thermal activation of Josephson junctions at MilliKelvin temperatures", IEEE Transactions on Applied Superconductivity, Volume 15, Issue 2, Part 1, June 2005, pp:868  871.
 Ignjatovic, Z, Bocko, M.F., "Sigmadelta analog to digital converter architecture based upon a modulator design employing a mirrored integrator", IEEE International Symposium on Circuits and Systems, pp.I11321135 Vol.1, (2004).
 Ignjatovic, Z, Bocko, M.F., "A fullydifferential switched capacitor chopper stabilized highpass filter (mirrored integrator)", IEEE International Symposium on Circuits and Systems, pp.I857860, (2004).
 Dong, X., Bocko, M.F., Ignjatovic Z., "Data hiding via phase manipulation of audio signals", 2004 IEEE International Conference on Acoustics, Speech, and Signal Processing. vol.5, pp.V377380, (2004).
 Velikic, G, Titlebaum, E.L., Bocko, M.F., "Musical note segmentation employing combined time and frequency analyses", IEEE International Conference on Acoustics, Speech, and Signal Processing, pp.IV277280, (2004).
 Bocko, M.F., Altun, O, Headlam D.J., Titlebaum E.L., "An expressive and compact representation of musical sound", IEEE International Conference on Acoustics, Speech, and Signal Processing, pp.IV249252, (2004).
 Dong, X., Bocko, M.F., and Ignjatovic,Z., "Robustness analysis of a digital audio steganographic method based on phase manipulation," Proceedings of the 7th International Conference on Signal Processing (ICSP) 2004, Vol. 3, pp:2375  2378.
 Ohki, T.A., Habif J.L., Feldman, M.J., Bocko, M.F., "Thermal design of superconducting digital circuits for milliKelvin operation", IEEE Transactions on Applied Superconductivity, vol.13, no.2, June 2003, pp.97881.
 Wulf, M., Zhou, X., Habif, J.L., Rott, P., Bocko, M.F., Feldman, M.J., "An unshunted comparator as a device for quantum measurements", IEEE Transactions on Applied Superconductivity, vol.13, no.2, June 2003, pp.9747.
 Crankshaw, D.S., Habif, J.L., Zhou, X., Orlando, T.P., Feldman, M.J., Bocko, M.F., "An RSFQ variable duty cycle oscillator for driving a superconductive qubit", IEEE Transactions on Applied Superconductivity, vol.13, no.2, June 2003, pp.9669.
 Mancini, C.A., Bocko, M.F., "Shortterm frequency stability of clock generators for multigigahertz rapidsingleflux quantum digital circuits", IEEE Transactions on Applied Superconductivity, vol.13, no.1, March 2003, pp.2537.
 D.S. Crankshaw, J.L. Habif, X. Zhou, T.P. Orlando , M.J. Feldman, and M.F. Bocko, "An RSFQ Variable Duty Cycle Oscillator for Driving a Superconductive Qubit," IEEE Trans. Appl. Superconductivity, 13, 966969, 2003.
 Ignjatovic, Z., Perillo, M, Heinzelman, W, and Bocko,M.F., "An Energy Conservation Method for Wireless Sensor Networks Employing a Blue Noise Spatial Sampling Technique," 2nd IEEE Upstate New York Workshop on Sensor Networks, Syracuse, NY, October 2003.
 Orlando, T.P., Lloyd, S., Levitov, L.S., Berggren, K.K., Feldman, M.J., Bocko, M.F., Mooij, J.E., Harmans, C.J.P., van der Wal, C.H., "Fluxbased superconducting qubits for quantum computation", Physica C, vol.372376, pt.1, 1 Aug. 2002, pp.194200.
 T.P. Orlando, S. Lloyd, L.S. Levitov, K.K. Berggren, M.J. Feldman, M.F. Bocko, J.E. Mooij, C.J.P. Harmans, and C.H. van der Wal, "Fluxbased Superconducting Qubits for Quantum Computation," Physica C 372, 194200 (P1) (2002).
 "A "Tipping Pulse" Scheme for rfSQUID Qubits", Xingxiang Zhou, Jonathan Habif, Mark F. Bocko, and Marc J. Feldman, IEEE Trans. Applied Superconductivity, 11, 10181021, (2001).
 "Design of a RSFQ Control Circuit to Observe MQC in an rfSQUID", Roberto ReyDeCastro, Mark F. Bocko, Andrea M. Herr, Cesar A. Mancini, Marc J. Feldman, IEEE Trans. Applied Superconductivity, 11, 10141017 (2001).
 "Measurement of Jitter in a Long Josephson Junction Soliton Oscillator Clock Source", Jonathan L. Habif, Cesar A. Mancini, and Mark F. Bocko, IEEE Trans. Applied Superconductivity, 11, 10861089, (2001).
 "A Realistic Experiment to Demonstrate Macroscopic Quantum Coherence", Marc J. Feldman and Mark F. Bocko, Physica C, 350, 171176, (2001).
 "Isolation Structures for the SolidState QuantumtoClassical Interface", Xingxiang Zhou, Mark F. Bocko, and Marc J. Feldman, International Conference on Quantum Information (ICQI), Rochester, July 2001.
 "A Tipping Pulse Scheme for an rfSQUID Qubit", Jonathan L. Habif, Xingxiang Zhou, Mark F. Bocko, and Marc J. Feldman, International Conference on Quantum Information (ICQI), Rochester, July 2001.
 "An Experiment to Observe Macroscopic Quantum Coherence in an rfSQUID", Xingxiang Zhou, Jonathan L. Habif, Pavel Rott, Mark F. Bocko, and Marc J. Feldman, International Conference on Quantum Information (ICQI), Rochester, July 2001.
 "Phaselocked operation of RSFQ ring oscillators", C.A. Mancini and M.F. Bocko, Supercond. Sci. Technol., 12, 789791 (1999).
 "Timing Jitter and Bit Errors in a 64Bit Circular Shift Register", A.M. Herr, M.J. Feldman, and M.F. Bocko, IEEE Trans. Applied Superconductivity, 9, 37213724 (1999).
 "ShortTerm Frequency Stability of RSFQ Ring Oscillators", C.A. Mancini and M.F. Bocko, IEEE Trans. Applied Superconductivity, 9, 35453548 (1999).
 "HighSpeed operation of a 64bit circular shift register," A.M. Herr, C.A. Mancini, N. Vukovic, M.F. Bocko and M.J. Feldman, IEEE Trans. Applied Superconductivity, 8, 2365 (1998).
 "Mechanical amplifiers for gravitational wave detectors", Mark F. Bocko, Am. J. Phys. 65, 574578 (1997).
 "Prospects for quantum coherent computation using superconducting electronics", Mark F. Bocko, Andrea M. Herr, and Marc J. Feldman, IEEE Trans. Appl. Supercon. 7, 36383641 (1997).
 Design and low speed testing of a fourbit RSFQ multiplieraccumulator", Quentin P. Herr, Nada Vukovic, Cesar A. Mancini, Kris Gaj, Qing Ke, Victor Adler, Eby G. Friedman, Andrzej Krasniewski, Mark F. Bocko, and Marc J. Feldman, IEEE Trans. Appl. Supercon. 7, 31683171 (1997).
 "High speed testing of a fourbit RSFQ decimation digital filter", Quentin P. Herr, Kris Gaj, Andrea M. Herr, Nada Vukovic, Cesar A. Mancini, Mark F. Bocko, and Marc J. Feldman, IEEE Trans. Appl. Supercon. 7, 29752978 (1997).
 RSFQ circular shift registers", Cesar A. Mancini, Nada Vukovic, Andrea M. Herr, Kris Gaj, Mark F. Bocko, and Marc J. Feldman, IEEE Trans. Appl. Supercon. 7, 28322835 (1997).
 "On the measurement of a weak classical force coupled to a harmonic oscillator", M.F. Bocko and R. Onofrio, Reviews of Modern Physics, 68, 755799, (1996).
 "Adder accumulator cells in RSFQ logic", D.K. Brock, S.S. Martinet, M.J. Feldman, and M.F. Bocko, IEEE Trans. on Applied Superconductivity, 5, 30063009, (1995).
 "Onchip picosecond delay measurement of RSFQ digital logic gates", D.K. Brock, S.S. Martinet, and M.F. Bocko, IEEE Trans. on Applied Superconductivity, 5, 28442248, (1995).
 "Design and testing of QOS comparators for an RSFQ based analog to digital converter", D. K. Brock, S.S. Martinet, and M.F. Bocko, IEEE Trans. on Applied Superconductivity, 5, 22442247, (1995).
 "A radiofrequency superconducting parametric transducer for gravitational wave antennae", M.A. Fisher, M.F. Bocko, L.E. Marchese, G. Zhang, and M. Karim, Rev. Sci. Instrum. 66, 106114, (1995).
 "Performance of an inertially coupled, threemode gravitational wave antenna prototype", L.E. Marchese, M.F. Bocko, G. Zhang, and M.Karim, Rev. Sci. Instrum. 65, 26272634, (1994).
 "Simulation and optimization of binary fulladder cells in rapid single flux quantum logic", S.S. Martinet, and M.F. Bocko, IEEE Trans. on Applied Superconductivity, 3, 27202723, (1993).
 "Multipump and quasistroboscopic backactionevasion measurements for resonantbar gravitational wave antennae", L.E. Marchese and M.F. Bocko, Phys. Rev. D45, 1869 (1992).
 "Uncertainty principle noise in vacuumtunneling transducers", C. Presilla, R.Onofrio and M.F. Bocko, Phys. Rev. B45, 3735, (1992).
 "The Rochester parabridge transducer", M.A. Fisher, M.F. Bocko, M. Karim, and G. Zhang, Proceedings of the Sixth Marcel Grossman Meeting on General Relativity, eds. H. Sato and T. Nakamura, World Scientific, Singapore, 1474 (1992).
 "Electron and photon tunneling transducers for gravitational wave antennae", M.F. Bocko, F. Bordoni, M. Karim, R. Onofrio, C. Presilla, S. Schiller, K.A. Stephenson, and N. Zhu, Proceedings of the Sixth Marcel Grossman Meeting on General Relativity, eds. H. Sato and T. Nakamura, World Scientific, Singapore, 1459 (1992).
 "Quasistroboscopic backactionevasion measurements for resonantbar gravitational wave antennae", L.E. Marchese, M.F. Bocko, R. Onofrio, Proceedings of the Sixth Marcel Grossman Meeting on General Relativity, eds. H. Sato and T.Nakamura, World Scientific, Singapore, 1322 (1992).
 "Tunneling transducers: quantum limited displacement monitors at the nanometer scale", M.F. Bocko and K.A. Stephenson, J. Vac Sci. Technol., B9, 1363, (1991).
 "Mechanical amplifier squeezes Brownian motion", M.F. Bocko, Physics World, Vol. 4, No 11, 21, (1991).
 "Coherent harmonic generation in superconductors for various criticalstate models", M.W. Johnson, D.H. Douglass and M.F. Bocko, Phys. Rev. B44, 7726 (1991).
 "A Phase Sensitive SIS Mixer to Circumvent the Quantum Limit", M.F. Bocko, Zhaonan Zhang and S. Martinet, IEEE Trans. Mag. 27, 33913394, (1991).
 "A transducer based upon vacuum tunneling", Stephenson, K.A.; Bocko, M.F., International Conference on SolidState Sensors and Actuators, 1991. Digest of Technical Papers, TRANSDUCERS '91, 1991 pp:389  392.
 "Novel transducers for gravitational wave detectors", M.A. Fisher, M.F.Bocko, G. Zhang, L.E. Marchese, M. Karim, and F. Bordoni, in Gravitational Astronomy: Instrument Design and Astrophysical Prospects, ed. by D.E. McClelland and H.A. Bachor, World Scientific, 317 (1991).
 "Vacuum Tunneling Transducer for Gravitational Wave Antennas", F. Bordoni, F. Fuligni and M.F. Bocko, "Proceedings of the Fifth Marcel Grossman Meeting on General Relativity", pp 18771887, World Scientific (1990).
 "Proposed RoomTemperature Detector for Gravitational Radiation from Galactic Sources", F. Bordoni, M. Karim, M.F. Bocko and T. Mengxi, Phys. Rev. D42, 29522955, (1990).
 "The Scanning Tunneling Microscope as a HighGain, LowNoise Displacement Sensor", M.F. Bocko, Rev. Sci. Instrum., 61, 37633768, (1990).
 "Behavior of a Nonlinear Resonator Driven at Subharmonic Frequencies", J.H. Baxter, M.F. Bocko and D.H. Douglass, Phys Rev. A41, 619625, (1990).
 "Reducednoise Nonreciprocal Transducer Based upon Vacuum Tunneling", K.A. Stephenson, M.F. Bocko and R.H. Koch, Phys. Rev. A40 66156625, (1989).
 "New Ways with Gravitational Waves", Mark F. Bocko, Nature, 338, 122, (1989).
 A RF Superconducting Electromechanical Transducer for Gravitational Wave Antennae", M.F. Bocko, W.W. Johnson and V. Iafolla, IEEE Trans. Mag. 25, 13581361 (1989).
 "Gravitational Radiation Detector" entry in The McGraw  Hill Encyclopedia of Science and Technology, M.F. Bocko and D.H. Douglass, McGraw  Hill Publishing Company, New York (1989).
 "Numerical Computation of TwoLO SIS Mixer Gain and Noise", Z.N. Zhang, M.F. Bocko and M.J. Wengler, IEEE Trans. Mag. 25, 10421045 (1989).
 "Phase Sensitive Heterodyne Receivers with SIS Quasiparticle Mixers", M.F. Bocko, M.J. Wengler and Z.N. Zhang, IEEE Trans. Mag. 25, 10381041 (1989).
 "Beating the Quantum Limit in SIS Mixers", M.J. Wengler and M.F. Bocko, IEEE Trans. Mag. 25, 13761379 (1989).
 "Parametric Transducers and Quantum Nondemolition in Bar Detectors", M.F. Bocko and W.W. Johnson, in Gravitational Wave Data Analysis, ed. by B.F. Schutz, pp 125134, Kluwer Academic Publishers (1989).
 "Vacuum Tunneling Probe: A Nonreciprocal, ReducedBackAction Transducer", M.F. Bocko, K.A. Stephenson and R.H. Koch, Phys. Rev. Lett.,61, 726729 (1988).
 "Spectral Changes and Frequency Shifts Produced by Source Correlations", M.F. Bocko, G.M. Morris and E. Wolf, Physics Today, 41, S60 (1988).
 "Phasesensitive Amplification and Deamplification of Noise and the Noise Rise in PeriodDoubling Systems Near a Bifurcation", M.F. Bocko and J. Battiato, Phys. Rev. Letts. 60, 17631766 (1988).
 "Observation of Frequency Shifts of Spectral Lines Due to Source Correlations", M.F. Bocko, D.H. Douglass and R.S. Knox, Phys. Rev. Lett., 58, 26492651 (1987).
 "Progress in Back Action Evasion Experiments", M.F. Bocko and W.W. Johnson, in New Techniques and Ideas in Quantum Measurement Theory, edited by D.M. Greenberger, The New York Academy of Sciences, New York, New York, (1986) pp 250262.(Invited contribution)
 "Squeezed Noise in Precision Force Measurements", M.F. Bocko, F. Bordoni, F. Fuligni and W.W. Johnson, in Noise in Physical Systems and 1/f Noise, edited by A. D'Amico and P. Mazzetti, Elsevier Science Publishers, Amsterdam, The Netherlands (1986) pp 4756.(Invited contribution)
 "Gravitational Radiation", article in The McGraw  Hill 1986 Yearbook of Science and Technology, M.F. Bocko and D.H. Douglass, McGraw  Hill Publishing Company, New York pp 222225 (1985).
 "PhaseSensitive Parametric Motion Transducer", M.F. Bocko and W.W. Johnson, Phys. Rev. A, 30, 21352137 (1984).
 "Bounded Regions of Chaotic Behavior in the Control Parameter Space of a Driven NonLinear Resonator", M.F. Bocko, D.H. Douglass and H.H. Frutchy, Phys. Lett. 104A, 388390 (1984).
 "The Rochester Gravitational Wave Detector", M.F. Bocko, M.W. Cromar, D.H. Douglass, R.Q. Gram, W.W. Johnson, M. Karim, C.C. Lam, D. Macaluso, J.R. Marsden, B. Muhlfelder, L. Narici and M. Zucker, J. Phys. E : Sci. Instrum., 17, 694702 (1984).
 "Noise Characteristics of a Cryogenically Cooled GaAs MESFET at 4 MHz", M. F. Bocko, Rev. Sci. Instrum. 55, 256257 (1984).
 "A Proposed Back Action Evading Readout for a Gravitational Wave Detector", M.F. Bocko, L. Narici, D.H. Douglass and W.W. Johnson, Phys. Lett. 97A, 259262 (1983).
 "The Rochester Gravitational Wave Detector : A Progress Report", M.F. Bocko, D. H. Douglass, R.Q. Gram, W.W. Johnson, M. Karim, B. Muhlfelder, L. Narici and M. Zucker, in 10th International Conference on General Relativity and Gravitation, edited by B. Bertotti, F. deFelice and A. Paccolini, pp 897900 (1983).
 Book Review, Theory and Experiment in Gravitational Physics by Clifford M. Will, reviewed by D.H. Douglass and M.F. Bocko, Science, 216, 979 (May 28, 1982).
 "Surpassing the Amplifier Limit for Force Detection", M.F. Bocko and W.W. Johnson, Phys. Rev. Lett. 48, 13711374 (1982).
 "Approaching the Quantum "Limit" for Force Detection", W.W. Johnson and M. F. Bocko, Phys. Rev. Lett., 47, 11841187 (1981).
Patents and Patent Applications

"Transducer Insitu Testing Apparatus and Method", Isaak Baber, Mark F. Bocko, Jpseph E. Pegg, William Simmons, US Patent 6,698,269.
 "SigmaDelta Analog to Digital Converter Architecture Based Upon a Novel Modulator Design Employing a "Mirrored Integrator", Zeljko Ignjatovic, Mark F. Bocko, US Patent 6,707,409.
 "Autonomous sensor system for remote sensing and signal transmission", Mark F. Bocko, Richard W. Lally, US Patent 6,747,572.
 "Data Hiding via Phase Manipulation of Audio Signals", Mark F. Bocko, Zeljko Ignjatovic, 2004 pending.
 "Multiplexedinputseparated sigmadelta analogtodigital converter design for pixellevel analogtodigital conversion", Zeljko Ignjatovic, Mark F. Bocko, 2004, pending.
 "A method and apparatus for the efficient computation of the discrete cosine transform of an image", Zeljko Ignjatovic, Mark F. Bocko, 2003, pending.
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